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» On Compressibility of Protein Sequences
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BMCBI
2006
103views more  BMCBI 2006»
13 years 10 months ago
Domain-based small molecule binding site annotation
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule bindi...
Kevin A. Snyder, Howard J. Feldman, Michel Dumonti...
NAR
2006
74views more  NAR 2006»
13 years 10 months ago
NOPdb: Nucleolar Proteome Database
The Nucleolar Proteome Database (NOPdb) archives data on .700 proteins that were identified by multiple mass spectrometry (MS) analyses from highly purified preparations of human ...
Anthony Kar Lun Leung, Laura Trinkle-Mulcahy, Yun ...
CSB
2004
IEEE
14 years 2 months ago
Space-Conserving Optimal DNA-Protein Alignment
DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to ident...
Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaram...
CPM
2007
Springer
99views Combinatorics» more  CPM 2007»
14 years 4 months ago
Speeding Up HMM Decoding and Training by Exploiting Sequence Repetitions
We present a method to speed up the dynamic program algorithms used for solving the HMM decoding and training problems for discrete time-independent HMMs. We discuss the applicatio...
Shay Mozes, Oren Weimann, Michal Ziv-Ukelson
BMCBI
2006
114views more  BMCBI 2006»
13 years 10 months ago
Evaluation and comparison of mammalian subcellular localization prediction methods
Background: Determination of the subcellular location of a protein is essential to understanding its biochemical function. This information can provide insight into the function o...
Josefine Sprenger, J. Lynn Fink, Rohan D. Teasdale