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» On Compressibility of Protein Sequences
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BMCBI
2007
130views more  BMCBI 2007»
13 years 9 months ago
Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
Background: Recognition of binding sites in proteins is a direct computational approach to the characterization of proteins in terms of biological and biochemical function. Residu...
Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan
BMCBI
2008
142views more  BMCBI 2008»
13 years 9 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
BMCBI
2005
159views more  BMCBI 2005»
13 years 8 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...
HPDC
2006
IEEE
14 years 3 months ago
Path Grammar Guided Trace Compression and Trace Approximation
Trace-driven simulation is an important technique used in the evaluation of computer architecture innovations. However using it for studying parallel computers and applications is...
Xiaofeng Gao, Allan Snavely, Larry Carter
IJIT
2004
13 years 10 months ago
Computing Entropy for Ortholog Detection
Abstract-- Biological sequences from different species are called orthologs if they evolved from a sequence of a common ancestor species and they have the same biological function....
Hsing-Kuo Pao, John Case