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» On Compressibility of Protein Sequences
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BIBM
2008
IEEE
170views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Protein Sequence Motif Super-Rule-Tree (SRT) Structure Constructed by Hybrid Hierarchical K-Means Clustering Algorithm
— Protein sequence motifs information is crucial to the analysis of biologically significant regions. The conserved regions have the potential to determine the role of the protei...
Bernard Chen, Jieyue He, Stephen Pellicer, Yi Pan
BMCBI
2006
153views more  BMCBI 2006»
13 years 7 months ago
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
Background: The identification of patterns in biological sequences is a key challenge in genome analysis and in proteomics. Frequently such patterns are complex and highly variabl...
Markus Seiler, Alexander Mehrle, Annemarie Poustka...
NAR
2008
101views more  NAR 2008»
13 years 7 months ago
PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
We have developed PVS (Protein Variability Server), a web-based tool that uses several variability metrics to compute the absolute site variability in multiple protein-sequence al...
Maria Garcia-Boronat, Carmen M. Diez-Rivero, Ellis...
NAR
2000
93views more  NAR 2000»
13 years 7 months ago
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure,...
Amos Bairoch, Rolf Apweiler
RECOMB
2009
Springer
14 years 8 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu