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» On General Laws of Complex Networks
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BMCBI
2010
202views more  BMCBI 2010»
15 years 4 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
CORR
2010
Springer
82views Education» more  CORR 2010»
15 years 4 months ago
Expansion and Search in Networks
Borrowing from concepts in expander graphs, we study the expansion properties of real-world, complex networks (e.g. social networks, unstructured peer-to-peer or P2P networks) and...
Arun S. Maiya, Tanya Y. Berger-Wolf
BMCBI
2004
323views more  BMCBI 2004»
15 years 3 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
DAC
2003
ACM
15 years 9 months ago
A timing-accurate modeling and simulation environment for networked embedded systems
The design of state-of-the-art, complex embedded systems requires the capability of modeling and simulating the complex networked environment in which such systems operate. This i...
Franco Fummi, Giovanni Perbellini, Paolo Gallo, Ma...
145
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GIS
2009
ACM
15 years 7 months ago
Dynamic network data exploration through semi-supervised functional embedding
The paper presents a framework for semi-supervised nonlinear embedding methods useful for exploratory analysis and visualization of spatio-temporal network data. The method provid...
Alexei Pozdnoukhov