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BMCBI
2002
133views more  BMCBI 2002»
13 years 7 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
ICDE
2007
IEEE
228views Database» more  ICDE 2007»
14 years 2 months ago
A General Cost Model for Dimensionality Reduction in High Dimensional Spaces
Similarity search usually encounters a serious problem in the high dimensional space, known as the “curse of dimensionality”. In order to speed up the retrieval efficiency, p...
Xiang Lian, Lei Chen 0002
BMCBI
2006
136views more  BMCBI 2006»
13 years 8 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
CIAC
2000
Springer
105views Algorithms» more  CIAC 2000»
14 years 7 days ago
Algorithms for a Simple Point Placement Problem
We consideralgorithms for a simple one-dimensionalpoint placement problem: given N points on a line, and noisy measurements of the distances between many pairs of them, estimate th...
Joshua Redstone, Walter L. Ruzzo
RECOMB
1998
Springer
14 years 3 days ago
Alignments without low-scoring regions
Given a strong match between regions of two sequences, how far can the match be meaningfully extended if gaps are allowed in the resulting alignment? The aim is to avoid searching...
Zheng Zhang 0004, Piotr Berman, Webb Miller