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    BMCBI
    2008
    170views more  BMCBI 2008»
    Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
    13 years 9 months ago
    Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
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    Background: Researchers interested in analysing the expression patterns of functionally related genes usually hope to improve the accuracy of their results beyond the boundaries o...
    Tao Xu, LinFang Du, Yan Zhou
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    BMCBI
    2006
    99views more  BMCBI 2006»
    MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools
    13 years 9 months ago
    MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools
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    Background: Processing raw DNA sequence data is an especially challenging task for relatively small laboratories and core facilities that produce as many as 5000 or more DNA seque...
    Chun Liang, Feng Sun, Haiming Wang, Junfeng Qu, Ro...
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    BMCBI
    2006
    166views more  BMCBI 2006»
    Extraction of phylogenetic network modules from the metabolic network
    13 years 9 months ago
    Extraction of phylogenetic network modules from the metabolic network
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    Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
    Takuji Yamada, Minoru Kanehisa, Susumu Goto
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    JIB
    2006
    220views more  JIB 2006»
    An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
    13 years 9 months ago
    An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
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    Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...
    Fiona Browne, Haiying Wang, Huiru Zheng, Francisco...
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    BMCBI
    2004
    177views more  BMCBI 2004»
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    13 years 9 months ago
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
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    Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
    Andrew F. Neuwald, Jun S. Liu
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