A central question in computational biology is the design of genetic markers to distinguish between two given sets of (DNA) sequences. This question is formalized as the NP-comple...
Abstract. The NP-complete Distinguishing Substring Selection problem (DSSS for short) asks, given a set of “good” strings and a set of “bad” strings, for a solution string ...
Given two strings and of lengths Ñ and Ò, respectively, the all-substrings longest common subsequence (ALCS) problem obtains the lengths of the subsequences common to and any su...
An implementation of an algorithm for string matching, commonly used in DNA string analysis, using configurable technology is proposed. The design of the circuit allows for pipeli...
Kenneth B. Kent, Sharon Van Schaick, Jacqueline E....
— A new technique that makes use of a systolic array structure is proposed for solving the common approximate substring (CAS) problem. This approach extends the technique introdu...