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» On The Closest String and Substring Problems
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MST
2006
149views more  MST 2006»
13 years 7 months ago
Parameterized Intractability of Distinguishing Substring Selection
A central question in computational biology is the design of genetic markers to distinguish between two given sets of (DNA) sequences. This question is formalized as the NP-comple...
Jens Gramm, Jiong Guo, Rolf Niedermeier
FCT
2003
Springer
14 years 23 days ago
On Exact and Approximation Algorithms for Distinguishing Substring Selection
Abstract. The NP-complete Distinguishing Substring Selection problem (DSSS for short) asks, given a set of “good” strings and a set of “bad” strings, for a solution string ...
Jens Gramm, Jiong Guo, Rolf Niedermeier
IPPS
2003
IEEE
14 years 25 days ago
A BSP/CGM Algorithm for the All-Substrings Longest Common Subsequence Problem
Given two strings and of lengths Ñ and Ò, respectively, the all-substrings longest common subsequence (ALCS) problem obtains the lengths of the subsequences common to and any su...
Carlos E. R. Alves, Edson Cáceres, Siang W....
DSD
2005
IEEE
123views Hardware» more  DSD 2005»
14 years 1 months ago
Hardware-Based Implementation of the Common Approximate Substring Algorithm
An implementation of an algorithm for string matching, commonly used in DNA string analysis, using configurable technology is proposed. The design of the circuit allows for pipeli...
Kenneth B. Kent, Sharon Van Schaick, Jacqueline E....
ISCAS
2006
IEEE
70views Hardware» more  ISCAS 2006»
14 years 1 months ago
A systolic array technique for determining common approximate substrings
— A new technique that makes use of a systolic array structure is proposed for solving the common approximate substring (CAS) problem. This approach extends the technique introdu...
Kenneth B. Kent, Jacqueline E. Rice