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» On Timed Models of Gene Networks
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ECAL
2005
Springer
14 years 1 months ago
On the Mean Convergence Time of Multi-parent Genetic Algorithms Without Selection
This paper investigates genetic drift in multi-parent genetic algorithms (MPGAs). An exact model based on Markov chains is proposed to formulate the variation of gene frequency. Th...
Chuan-Kang Ting
BMCBI
2008
114views more  BMCBI 2008»
13 years 8 months ago
Partial mixture model for tight clustering of gene expression time-course
Background: Tight clustering arose recently from a desire to obtain tighter and potentially more informative clusters in gene expression studies. Scattered genes with relatively l...
Yinyin Yuan, Chang-Tsun Li, Roland Wilson
BMCBI
2008
140views more  BMCBI 2008»
13 years 8 months ago
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Background: The most renowned biological ontology, Gene Ontology (GO) is widely used for annotations of genes and gene products of different organisms. However, there are shortcom...
Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang,...
FSKD
2006
Springer
127views Fuzzy Logic» more  FSKD 2006»
13 years 11 months ago
On the Society of Genome: Social Affiliation Network Analysis of Microarray Data
Abstract. To investigate the structure of the genomic interaction network built from yeast gene-expression compendium dataset of hundreds of systematic perturbations, social affili...
Jung Hun Ohn, Jihoon Kim, Ju Han Kim
WABI
2009
Springer
124views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction
Background: Functionally related genes tend to be correlated in their expression patterns across multiple conditions and/or tissue-types. Thus co-expression networks are often use...
Matthew Hansen, Logan Everett, Larry Singh, Sridha...