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» On Timed Models of Gene Networks
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BMCBI
2008
130views more  BMCBI 2008»
13 years 8 months ago
Function approximation approach to the inference of reduced NGnet models of genetic networks
Background: The inference of a genetic network is a problem in which mutual interactions among genes are deduced using time-series of gene expression patterns. While a number of m...
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hi...
WABI
2005
Springer
14 years 1 months ago
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds
d Abstract] Tamir Tuller , Efrat Oron , Erez Makavy , Daniel A. Chamovitz † , and Benny Chor ‡ Tel-Aviv University, Tel-Aviv 69978, Israel. Abstract. We study gene expression d...
Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. C...
GECCO
2005
Springer
178views Optimization» more  GECCO 2005»
14 years 1 months ago
A co-evolutionary hybrid algorithm for multi-objective optimization of gene regulatory network models
In this paper, the parameters of a genetic network for rice flowering time control have been estimated using a multiobjective genetic algorithm approach. We have modified the rece...
Praveen Koduru, Sanjoy Das, Stephen Welch, Judith ...
ESWA
2006
103views more  ESWA 2006»
13 years 7 months ago
Model gene network by semi-fixed Bayesian network
Gene networks describe functional pathways in a given cell or tissue, representing processes such as metabolism, gene expression regulation, and protein or RNA transport. Thus, le...
Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
GECCO
2004
Springer
164views Optimization» more  GECCO 2004»
14 years 1 months ago
Fuzzy Dominance Based Multi-objective GA-Simplex Hybrid Algorithms Applied to Gene Network Models
Hybrid algorithms that combine genetic algorithms with the Nelder-Mead simplex algorithm have been effective in solving certain optimization problems. In this article, we apply a s...
Praveen Koduru, Sanjoy Das, Stephen Welch, Judith ...