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» On Ultrametric Algorithmic Information
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BMCBI
2004
146views more  BMCBI 2004»
15 years 4 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt
CN
2004
150views more  CN 2004»
15 years 4 months ago
Optimizing interconnection policies
There are two basic types of interconnection agreements between providers in the Internet: peering and transit. A decision every Internet network service provider (INSP) has to ma...
Oliver Heckmann, Jens Schmitt, Ralf Steinmetz
BMCBI
2002
109views more  BMCBI 2002»
15 years 4 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
BMCBI
2002
131views more  BMCBI 2002»
15 years 4 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida
BMCBI
2002
133views more  BMCBI 2002»
15 years 4 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
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