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RECOMB
2006
Springer
14 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2002
Springer
14 years 10 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
PODS
2006
ACM
196views Database» more  PODS 2006»
14 years 10 months ago
The containment problem for REAL conjunctive queries with inequalities
Query containment is a fundamental algorithmic problem in database query processing and optimization. Under set semantics, the query-containment problem for conjunctive queries ha...
T. S. Jayram, Phokion G. Kolaitis, Erik Vee
SODA
2010
ACM
149views Algorithms» more  SODA 2010»
14 years 7 months ago
Sharp kernel clustering algorithms and their associated Grothendieck inequalities
abstract Subhash Khot Assaf Naor In the kernel clustering problem we are given a (large) n ? n symmetric positive semidefinite matrix A = (aij) with n i=1 n j=1 aij = 0 and a (sma...
Subhash Khot, Assaf Naor
SODA
2010
ACM
169views Algorithms» more  SODA 2010»
14 years 7 months ago
Efficiently Decodable Non-adaptive Group Testing
We consider the following "efficiently decodable" nonadaptive group testing problem. There is an unknown string x {0, 1}n with at most d ones in it. We are allowed to t...
Piotr Indyk, Hung Q. Ngo, Atri Rudra