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RECOMB
2004
Springer
14 years 8 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
EDBT
2012
ACM
257views Database» more  EDBT 2012»
11 years 10 months ago
Indexing and mining topological patterns for drug discovery
Increased availability of large repositories of chemical compounds has created new challenges and opportunities for the application of data-mining and indexing techniques to probl...
Sayan Ranu, Ambuj K. Singh
BMCBI
2004
208views more  BMCBI 2004»
13 years 7 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
ICPR
2008
IEEE
14 years 2 months ago
A new clustering approach based on graph partitioning for navigation patterns mining
We present a study of the web based user navigation patterns mining and propose a novel approach for clustering of user navigation patterns. The approach is based on the graph par...
Mehrdad Jalali, Norwati Mustapha, Ali Mamat, Nasir...
IDEAS
2005
IEEE
111views Database» more  IDEAS 2005»
14 years 1 months ago
Evaluation of Queries on Tree-Structured Data Using Dimension Graphs
The recent proliferation of XML-based standards and technologies for managing data on the Web demonstrates the need for effective and efficient management of treestructured data....
Theodore Dalamagas, Dimitri Theodoratos, Antonis K...