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APBC
2004
108views Bioinformatics» more  APBC 2004»
15 years 4 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
DAGSTUHL
1996
15 years 4 months ago
What Not to Do When Writing an Interpreter for Specialisation
A partial evaluator, given a program and a known "static" part of its input data, outputs a specialised or residual program in which computations depending only on the st...
Neil D. Jones
111
Voted
BMCBI
2010
150views more  BMCBI 2010»
15 years 2 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
120
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BMCBI
2010
84views more  BMCBI 2010»
15 years 2 months ago
Word add-in for ontology recognition: semantic enrichment of scientific literature
Background: In the current era of scientific research, efficient communication of information is paramount. As such, the nature of scholarly and scientific communication is changi...
J. Lynn Fink, Pablo Fernicola, Rahul Chandran, Sav...
130
Voted
BMCBI
2010
118views more  BMCBI 2010»
15 years 2 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...