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» On finding hypercycles in chemical reaction networks
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KDD
2008
ACM
121views Data Mining» more  KDD 2008»
14 years 11 months ago
Reconstructing chemical reaction networks: data mining meets system identification
We present an approach to reconstructing chemical reaction networks from time series measurements of the concentrations of the molecules involved. Our solution strategy combines t...
Yong Ju Cho, Naren Ramakrishnan, Yang Cao
ISB
2002
112views more  ISB 2002»
13 years 10 months ago
High quality visualization of biochemical pathways in BioPath
ABSTRACT: Biochemical reactions form large and complex networks. Comprehensible visual representations of these networks help biochemists understand the relationships between the c...
Falk Schreiber
BMCBI
2010
86views more  BMCBI 2010»
13 years 11 months ago
Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
Background: Understanding of secondary metabolic pathway in plant is essential for finding druggable candidate enzymes. However, there are many enzymes whose functions are not yet...
Hiroto Saigo, Masahiro Hattori, Hisashi Kashima, K...
ANTSW
2010
Springer
13 years 9 months ago
Evaluating the Robustness of Activator-Inhibitor Models for Cluster Head Computation
Activator-inhibitor models have been widely used to explain several morphogenetic processes. They have also been used to engineer algorithms for computer graphics, distributed syst...
Lidia Yamamoto, Daniele Miorandi