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» On genomic coding theory
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RECOMB
2000
Springer
13 years 11 months ago
A compression algorithm for DNA sequences and its applications in genome comparison
We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
Xin Chen, Sam Kwong, Ming Li
IPPS
2009
IEEE
14 years 2 months ago
Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
BMCBI
2008
222views more  BMCBI 2008»
13 years 7 months ago
TOBFAC: the database of tobacco transcription factors
Background: Regulation of gene expression at the level of transcription is a major control point in many biological processes. Transcription factors (TFs) can activate and/or repr...
Paul J. Rushton, Marta T. Bokowiec, Thomas W. Laud...
EUROGP
1999
Springer
105views Optimization» more  EUROGP 1999»
13 years 12 months ago
How to Invent Functions
The paper presents the abstraction transformation which is a fundaethod for creating functions in ADATE. The use of abstraction turns out to be similar to evolution by gene duplic...
Roland Olsson

Book
271views
15 years 5 months ago
Notes on Coding Theory
"These notes were written over a period of years as part of an advanced undergraduate/ beginning graduate course on Algebraic Coding Theory at Michigan State University.&quo...
J. I. Hall