We present a lossless compression algorithm, GenCompress, for genetic sequences, based on searching for approximate repeats. Our algorithm achieves the best compression ratios for...
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
Background: Regulation of gene expression at the level of transcription is a major control point in many biological processes. Transcription factors (TFs) can activate and/or repr...
Paul J. Rushton, Marta T. Bokowiec, Thomas W. Laud...
The paper presents the abstraction transformation which is a fundaethod for creating functions in ADATE. The use of abstraction turns out to be similar to evolution by gene duplic...
"These notes were written over a period of years as part of an advanced undergraduate/
beginning graduate course on Algebraic Coding Theory at Michigan
State University.&quo...