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» On predicting secondary structure transition
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EUROGP
2004
Springer
105views Optimization» more  EUROGP 2004»
14 years 2 months ago
Evolved Matrix Operations for Post-processing Protein Secondary Structure Predictions
Predicting the three-dimensional structure of proteins is a hard problem, so many have opted instead to predict the secondary structural state (usually helix, strand or coil) of e...
Varun Aggarwal, Robert M. MacCallum
APBC
2004
123views Bioinformatics» more  APBC 2004»
13 years 10 months ago
Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure Prediction
Here we investigate an extension of a previously suggested "automatic amide I frequency selection procedure" where we introduce an additional criterion utilizing empiric...
Joachim A. Hering, Peter R. Innocent, Parvez I. Ha...
ICCCI
2009
Springer
14 years 3 months ago
Accuracy in Predicting Secondary Structure of Ionic Channels
Ionic channels are among the most difficult proteins for experimental structure determining, very few of them has been resolved. Bioinformatical tools has not been tested for this ...
Bogumil Konopka, Witold Dyrka, Jean-Christophe Neb...
BMCBI
2006
172views more  BMCBI 2006»
13 years 9 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...
ICASSP
2008
IEEE
14 years 3 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...