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    » On predicting secondary structure transition
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    BMCBI
    2010
    141views more  BMCBI 2010»
    Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles
    13 years 9 months ago
    Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles
    Download  www.biomedcentral.com
    Background: Enzymes belonging to acyl:CoA synthetase (ACS) superfamily activate wide variety of substrates and play major role in increasing the structural and functional diversit...
    Pankaj Khurana, Rajesh S. Gokhale, Debasisa Mohant...
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    NAR
    2007
    129views more  NAR 2007»
    taveRNA: a web suite for RNA algorithms and applications
    13 years 8 months ago
    taveRNA: a web suite for RNA algorithms and applications
    Download  compbio.cs.sfu.ca
    We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is ...
    Cagri Aksay, Raheleh Salari, Emre Karakoç, ...
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    HPDC
    2010
    IEEE
    146views Distributed And Parallel Com...» more  HPDC 2010»
    Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
    13 years 10 months ago
    Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
    Download  salsahpc.indiana.edu
    The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
    Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...
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    BMCBI
    2004
    151views more  BMCBI 2004»
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    13 years 8 months ago
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    Download  www.biomedcentral.com
    Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
    Jens Reeder, Robert Giegerich
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    BMCBI
    2007
    128views more  BMCBI 2007»
    Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots
    13 years 9 months ago
    Detailed estimation of bioinformatics prediction reliability through the Fragmented Prediction Performance Plots
    Download  www.biomedcentral.com
    Background: An important and yet rather neglected question related to bioinformatics predictions is the estimation of the amount of data that is needed to allow reliable predictio...
    Oliviero Carugo
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