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» On the Comparability of Software Clustering Algorithms
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BMCBI
2008
116views more  BMCBI 2008»
15 years 3 months ago
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Background: Due to their role of receptors or transporters, membrane proteins play a key role in many important biological functions. In our work we used Grammatical Inference (GI...
Piedachu Peris, Damián López, Marcel...
BMCBI
2010
143views more  BMCBI 2010»
15 years 23 days ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
15 years 8 months ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
15 years 8 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
ICTAI
2003
IEEE
15 years 8 months ago
Parallel Mining of Maximal Frequent Itemsets from Databases
In this paper, we propose a parallel algorithm for mining maximal frequent itemsets from databases. A frequent itemset is maximal if none of its supersets is frequent. The new par...
Soon Myoung Chung, Congnan Luo