Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
We generalize the unfolding semantics, previously developed for concrete formalisms such as Petri nets and graph grammars, to the setting of (single pushout) rewriting over adhesiv...
Paolo Baldan, Andrea Corradini, Tobias Heindel, Ba...
— Timed Continuous Petri Net (TCPN) systems are piecewise linear models with input constraints that can approximate the dynamical behavior of a class of timed discrete event syst...
In this paper we propose DFL -- a formal, graphical workflow language for dataflows, i.e., workflows where large amounts of complex data are manipulated, and the structure of the ...
Jan Hidders, Natalia Kwasnikowska, Jacek Sroka, Je...
We present SPNP, a powerful GSPN package developed at Duke University. SPNP allows the modeling of complex system behaviors. Advanced constructs are available, such as markingdepe...
Gianfranco Ciardo, Jogesh K. Muppala, Kishor S. Tr...