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CANDC
2008
ACM
13 years 7 months ago
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences
Background: The Z-curve is a three dimensional representation of DNA sequences proposed over a decade ago and has been extensively applied to sequence segmentation, horizontal gen...
Eran Elhaik, Dan Graur, Kresimir Josic
ICDCS
2008
IEEE
14 years 2 months ago
PFC: Transparent Optimization of Existing Prefetching Strategies for Multi-Level Storage Systems
The multi-level storage architecture has been widely adopted in servers and data centers. However, while prefetching has been shown as a crucial technique to exploit the sequentia...
Zhe Zhang, Kyuhyung Lee, Xiaosong Ma, Yuanyuan Zho...
ICPP
2009
IEEE
14 years 2 months ago
End-to-End Study of Parallel Volume Rendering on the IBM Blue Gene/P
—In addition to their role as simulation engines, modern supercomputers can be harnessed for scientific visualization. Their extensive concurrency, parallel storage systems, and...
Tom Peterka, Hongfeng Yu, Robert B. Ross, Kwan-Liu...
PPOPP
2006
ACM
14 years 1 months ago
Optimizing irregular shared-memory applications for distributed-memory systems
In prior work, we have proposed techniques to extend the ease of shared-memory parallel programming to distributed-memory platforms by automatic translation of OpenMP programs to ...
Ayon Basumallik, Rudolf Eigenmann
BMCBI
2010
174views more  BMCBI 2010»
13 years 7 months ago
The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based h
Background: To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight...
Junbai Wang