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» On the Kolmogorov-Chaitin Complexity for short sequences
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SODA
2008
ACM
104views Algorithms» more  SODA 2008»
13 years 10 months ago
Fast and reliable reconstruction of phylogenetic trees with very short edges
Abstract Ilan Gronau Shlomo Moran Sagi Snir Phylogenetic reconstruction is the problem of reconstructing an evolutionary tree from sequences corresponding to leaves of that tree. ...
Ilan Gronau, Shlomo Moran, Sagi Snir
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
14 years 2 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
RECOMB
2004
Springer
14 years 8 months ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh
SAGT
2010
Springer
181views Game Theory» more  SAGT 2010»
13 years 7 months ago
On the Complexity of Pareto-optimal Nash and Strong Equilibria
We consider the computational complexity of coalitional solution concepts in scenarios related to load balancing such as anonymous and congestion games. In congestion games, Paret...
Martin Hoefer, Alexander Skopalik
LATA
2010
Springer
14 years 1 months ago
A Randomized Numerical Aligner (rNA)
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...
Alberto Policriti, Alexandru I. Tomescu, Francesco...