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» On the Kolmogorov-Chaitin Complexity for short sequences
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BMCBI
2010
127views more  BMCBI 2010»
13 years 10 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
NAR
2011
251views Computer Vision» more  NAR 2011»
13 years 4 months ago
The IMGT/HLA database
The IMGT/HLA database (http://www.ebi.ac.uk/imgt/ hla) has provided a centralized repository for the sequences of the alleles named by the WHO Nomenclature Committee for Factors o...
James Robinson, Kavita Mistry, Hamish McWilliam, R...
BMCBI
2010
161views more  BMCBI 2010»
13 years 7 months ago
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Background: Physical maps are the substrate of genome sequencing and map-based cloning and their construction relies on the accurate assembly of BAC clones into large contigs that...
Zeev Frenkel, Etienne Paux, David I. Mester, Cathe...
IJIT
2004
13 years 11 months ago
Computing Entropy for Ortholog Detection
Abstract-- Biological sequences from different species are called orthologs if they evolved from a sequence of a common ancestor species and they have the same biological function....
Hsing-Kuo Pao, John Case
AAAI
2000
13 years 11 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang