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» On the Structure of Valiant's Complexity Classes
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CORR
2010
Springer
136views Education» more  CORR 2010»
13 years 6 months ago
Schaefer's theorem for graphs
Schaefer's theorem is a complexity classification result for so-called Boolean constraint satisfaction problems: it states that every Boolean constraint satisfaction problem ...
Manuel Bodirsky, Michael Pinsker
BMCBI
2010
107views more  BMCBI 2010»
13 years 3 months ago
Interaction prediction and classification of PDZ domains
Background: PDZ domain is a well-conserved, structural protein domain found in hundreds of signaling proteins that are otherwise unrelated. PDZ domains can bind to the C-terminal ...
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
FOCS
2007
IEEE
14 years 3 months ago
Can you beat treewidth?
: It is well-known that constraint satisfaction problems (CSP) over an unbounded domain can be solved in time nO(k) if the treewidth of the primal graph of the instance is at most ...
Dániel Marx
CSR
2007
Springer
14 years 2 months ago
Marrying Words and Trees
Traditionally, data that has both linear and hierarchical structure, such as annotated linguistic data, is modeled using ordered trees and queried using tree automata. In this pap...
Rajeev Alur
RECOMB
2009
Springer
14 years 9 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...