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» On the number of zero-sum subsequences
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DATE
2000
IEEE
93views Hardware» more  DATE 2000»
14 years 2 months ago
Fast Evaluation of Sequence Pair in Block Placement by Longest Common Subsequence Computation
In [1], Murata et al introduced an elegant representation of block placement called sequence pair. All block placement algorithms which are based on sequence pairs use simulated a...
Xiaoping Tang, D. F. Wong, Ruiqi Tian
CSR
2006
Springer
14 years 1 months ago
All Semi-local Longest Common Subsequences in Subquadratic Time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, w...
Alexandre Tiskin
JDA
2008
72views more  JDA 2008»
13 years 9 months ago
Semi-local longest common subsequences in subquadratic time
For two strings a, b of lengths m, n respectively, the longest common subsequence (LCS) problem consists in comparing a and b by computing the length of their LCS. In this paper, ...
Alexander Tiskin
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 3 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
TCS
2008
13 years 9 months ago
Algorithms for computing variants of the longest common subsequence problem
The longest common subsequence(LCS) problem is one of the classical and wellstudied problems in computer science. The computation of the LCS is a frequent task in DNA sequence ana...
Costas S. Iliopoulos, M. Sohel Rahman