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» On the optimality of the neighbor-joining algorithm
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JCB
2002
108views more  JCB 2002»
13 years 7 months ago
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
This paper investigates the standard ordinary least-squares version 24 and the balanced version 20 of the minimum evolution principle. For the standard version, we provide a greedy...
Richard Desper, Olivier Gascuel
BMCBI
2007
138views more  BMCBI 2007»
13 years 7 months ago
Fast computation of distance estimators
Background: Some distance methods are among the most commonly used methods for reconstructing phylogenetic trees from sequence data. The input to a distance method is a distance m...
Isaac Elias, Jens Lagergren
BMCBI
2007
95views more  BMCBI 2007»
13 years 7 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
SIAMJO
2010
89views more  SIAMJO 2010»
13 years 2 months ago
A New Sequential Optimality Condition for Constrained Optimization and Algorithmic Consequences
Necessary first-order sequential optimality conditions provide adequate theoretical tools to justify stopping criteria for nonlinear programming solvers. These conditions are sati...
Roberto Andreani, José Mario Martíne...