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» On the rigidity of molecular graphs
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SIAMSC
2008
182views more  SIAMSC 2008»
13 years 7 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
BMCBI
2006
184views more  BMCBI 2006»
13 years 7 months ago
PathSys: integrating molecular interaction graphs for systems biology
Background: The goal of information integration in systems biology is to combine information from a number of databases and data sets, which are obtained from both high and low th...
Michael Baitaluk, Xufei Qian, Shubhada Godbole, Al...
RECOMB
2006
Springer
14 years 8 months ago
Simulating Protein Motions with Rigidity Analysis
Abstract. Protein motions, ranging from molecular flexibility to largescale conformational change, play an essential role in many biochemical processes. Despite the explosion in ou...
Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M...
ALMOB
2006
89views more  ALMOB 2006»
13 years 7 months ago
On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the ...
Katharina Anna Lehmann, Michael Kaufmann, Stephan ...
WABI
2005
Springer
14 years 1 months ago
Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity
We present recent developments in efficiently maintaining the boundary and surface area of protein molecules as they undergo conformational changes. As the method that we devised k...
Eran Eyal, Dan Halperin