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» Ontology: Use and Abuse
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BMCBI
2005
117views more  BMCBI 2005»
13 years 7 months ago
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Background: The Gene Ontology Annotation (GOA) database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase....
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian...
BMCBI
2004
106views more  BMCBI 2004»
13 years 7 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...
BMCBI
2011
13 years 2 months ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev
CIKM
2011
Springer
12 years 7 months ago
Simultaneous joint and conditional modeling of documents tagged from two perspectives
This paper explores correspondence and mixture topic modeling of documents tagged from two different perspectives. There has been ongoing work in topic modeling of documents with...
Pradipto Das, Rohini K. Srihari, Yun Fu
ICDE
2006
IEEE
232views Database» more  ICDE 2006»
14 years 9 months ago
Dual Labeling: Answering Graph Reachability Queries in Constant Time
Graph reachability is fundamental to a wide range of applications, including XML indexing, geographic navigation, Internet routing, ontology queries based on RDF/OWL, etc. Many ap...
Haixun Wang, Hao He, Jeffrey Xu Yu, Jun Yang 0001,...