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BIBM
2008
IEEE
141views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Protein-Protein Interaction Network Alignment by Quantitative Simulation
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Perry Evans, Ted Sandler, Lyle H. Ungar
BMCBI
2010
112views more  BMCBI 2010»
13 years 7 months ago
TabSQL: a MySQL tool to facilitate mapping user data to public databases
Background: With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public...
Xiaoqin Xia, Michael McClelland, Yipeng Wang
BIOINFORMATICS
2007
102views more  BIOINFORMATICS 2007»
13 years 7 months ago
OmicBrowse: a browser of multidimensional omics annotations
OmicBrowse is a browser to explore multiple datasets coordinated in the multidimensional omic space integrating omics knowledge ranging from genomes to phenomes and connecting evo...
Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, N...
BIOINFORMATICS
2007
117views more  BIOINFORMATICS 2007»
13 years 7 months ago
Mining biological networks for unknown pathways
Biological pathways provide significant insights on the interaction mechanisms of molecules. Presently, many essential pathways still remain unknown or incomplete for newly sequen...
Ali Cakmak, Gultekin Özsoyoglu
BMCBI
2007
174views more  BMCBI 2007»
13 years 7 months ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...