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» OpenFlyData: The Way to Go for Biological Data Integration
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BMCBI
2011
13 years 2 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
UAI
2000
13 years 8 months ago
Exploiting Qualitative Knowledge in the Learning of Conditional Probabilities of Bayesian Networks
Algorithms for learning the conditional probabilities of Bayesian networks with hidden variables typically operate within a high-dimensional search space and yield only locally op...
Frank Wittig, Anthony Jameson
BMCBI
2005
189views more  BMCBI 2005»
13 years 7 months ago
A sentence sliding window approach to extract protein annotations from biomedical articles
Background: Within the emerging field of text mining and statistical natural language processing (NLP) applied to biomedical articles, a broad variety of techniques have been deve...
Martin Krallinger, Maria Padron, Alfonso Valencia
BMCBI
2007
108views more  BMCBI 2007»
13 years 7 months ago
Design and implementation of a generalized laboratory data model
Background: Investigators in the biological sciences continue to exploit laboratory automation methods and have dramatically increased the rates at which they can generate data. I...
Michael C. Wendl, Scott Smith, Craig S. Pohl, Davi...
ASM
2000
ASM
13 years 12 months ago
Modeling the Dynamics of UML State Machines
We define the dynamic semantics of UML State Machines which integrate statecharts with the UML object model. The use of ASMs allows us (a) to rigorously model the event driven run...
Egon Börger, Alessandra Cavarra, Elvinia Ricc...