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» Optimal detection of sequence similarity by local alignment
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Publication
396views
14 years 4 months ago
Detecting Abandoned Objects with A Moving Camera
This paper presents a novel framework for detecting non-flat abandoned objects by matching a reference and a target video sequences. The reference video is taken by a moving camera...
Hui Kong, Jean-Yves Audibert and Jean Ponce
TC
2010
13 years 6 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
FECS
2006
113views Education» more  FECS 2006»
13 years 9 months ago
A Lightweight Program Similarity Detection Model using XML and Levenshtein Distance
Program plagiarism is one of the most significant problems in Computer Science education. Most common plagiarism includes modifying comments, reordering statements, and changing v...
Seo-Young Noh, Sangwoo Kim, Cheonyoung Jung