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» Optimal implementations of UPGMA and other common clustering...
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BMCBI
2008
166views more  BMCBI 2008»
13 years 7 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
CCGRID
2003
IEEE
14 years 5 days ago
CARDs: Cluster-Aware Remote Disks
This paper presents Cluster-Aware Remote Disks (CARDs), a Single System I/O architecture for cluster computing. CARDs virtualize accesses to remote cluster disks over a System Are...
Vlad Olaru, Walter F. Tichy
BMCBI
2004
151views more  BMCBI 2004»
13 years 6 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
GECCO
2004
Springer
14 years 8 days ago
Towards a Generally Applicable Self-Adapting Hybridization of Evolutionary Algorithms
When applied to real-world problems, the powerful optimization tool of Evolutionary Algorithms frequently turns out to be too time-consuming due to elaborate fitness calculations t...
Wilfried Jakob, Christian Blume, Georg Bretthauer
COCOON
2010
Springer
13 years 11 months ago
Clustering with or without the Approximation
We study algorithms for clustering data that were recently proposed by Balcan, Blum and Gupta in SODA’09 [4] and that have already given rise to two follow-up papers. The input f...
Frans Schalekamp, Michael Yu, Anke van Zuylen