96 search results - page 3 / 20 » Optimal neighborhood indexing for protein similarity search |
RECOMB
2007
Springer
14 years 7 months ago
2007
Springer
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
WWW
2005
ACM
14 years 8 months ago
2005
ACM
To exploit the similarity information hidden in the hyperlink structure of the web, this paper introduces algorithms scalable to graphs with billions of vertices on a distributed ...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
SSDBM
1999
IEEE
13 years 11 months ago
1999
IEEE
We address the problem of similarity search in large time series databases. We introduce a novel indexing algorithm that allows faster retrieval. The index is formed by creating b...
SISAP
2008
IEEE
14 years 1 months ago
2008
IEEE
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...