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BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 10 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
GECCO
2007
Springer
163views Optimization» more  GECCO 2007»
15 years 10 months ago
Exploring medical data using visual spaces with genetic programming and implicit functional mappings
Two medical data sets (Breast cancer and Colon cancer) are investigated within a visual data mining paradigm through the unsupervised construction of virtual reality spaces using ...
Julio J. Valdés, Robert Orchard, Alan J. Ba...
COCOON
2005
Springer
15 years 9 months ago
Quartet-Based Phylogeny Reconstruction from Gene Orders
Abstract. Phylogenetic reconstruction from gene-rearrangement data is attracting increasing attention from biologists and computer scientists. Methods used in reconstruction includ...
Tao Liu, Jijun Tang, Bernard M. E. Moret
ICCAD
1997
IEEE
108views Hardware» more  ICCAD 1997»
15 years 8 months ago
Negative thinking by incremental problem solving: application to unate covering
We introduce a new technique to solve exactly a discrete optimization problem, based on the paradigm of “negative” thinking. The motivation is that when searching the space of...
Evguenii I. Goldberg, Luca P. Carloni, Tiziano Vil...
GECCO
2006
Springer
213views Optimization» more  GECCO 2006»
15 years 7 months ago
Evolutionary unit testing of object-oriented software using strongly-typed genetic programming
Evolutionary algorithms have successfully been applied to software testing. Not only approaches that search for numeric test data for procedural test objects have been investigate...
Stefan Wappler, Joachim Wegener