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» Optimal sequencing by hybridization in rounds
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ICCD
2003
IEEE
109views Hardware» more  ICCD 2003»
14 years 4 months ago
Independent Test Sequence Compaction through Integer Programming
We discuss the compaction of independent test sequences for sequential circuits. Our first contribution is the formulation of this problem as an integer program, which we then so...
Petros Drineas, Yiorgos Makris
HYBRID
2010
Springer
14 years 2 months ago
A descent algorithm for the optimal control of constrained nonlinear switched dynamical systems
One of the oldest problems in the study of dynamical systems is the calculation of an optimal control. Though the determination of a numerical solution for the general nonconvex o...
Humberto González, Ramanarayan Vasudevan, M...
RECOMB
2000
Springer
13 years 11 months ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
VLDB
2005
ACM
85views Database» more  VLDB 2005»
14 years 28 days ago
Pattern Tree Algebras: Sets or Sequences?
XML and XQuery semantics are very sensitive to the order of the produced output. Although pattern-tree based algebraic approaches are becoming more and more popular for evaluating...
Stelios Paparizos, H. V. Jagadish
BMCBI
2004
96views more  BMCBI 2004»
13 years 7 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...