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» Optimization Multiple Sequence Alignment Scheme in DC-BTA

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BIBE
2007
IEEE

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QOMA2: Optimizing the alignment of many sequences

15 years 9 months ago

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Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...

Xu Zhang, Tamer Kahveci

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120

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WABI
2007
Springer

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Inverse Sequence Alignment from Partial Examples

15 years 9 months ago

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When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...

Eagu Kim, John D. Kececioglu

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PSB
2008

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Local Reliability Measures from Sets of Co-Optimal Multiple Sequence Alignments

15 years 4 months ago

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Giddy Landan, Dan Grauer

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