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BMCBI
2006
100views more  BMCBI 2006»
13 years 10 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
BMCBI
2006
165views more  BMCBI 2006»
13 years 10 months ago
Improving the quality of protein structure models by selecting from alignment alternatives
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...
BMCBI
2006
130views more  BMCBI 2006»
13 years 10 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
CN
2006
61views more  CN 2006»
13 years 10 months ago
Structuring topologically aware overlay networks using domain names
Abstract-- Overlay networks are application layer systems which facilitate users in performing distributed functions such as searches over the contents of other users. An important...
Demetrios Zeinalipour-Yazti, Vana Kalogeraki
BMCBI
2007
216views more  BMCBI 2007»
13 years 10 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
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