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HCW
1999
IEEE
14 years 11 days ago
Communication Modeling of Heterogeneous Networks of Workstations for Performance Characterization of Collective Operations
: Networks of Workstations (NOW) have become an attractive alternative platform for high performance computing. Due to the commodity nature of workstations and interconnects and du...
Mohammad Banikazemi, Jayanthi Sampathkumar, Sandee...
ICCMS
2009
118views more  ICCMS 2009»
13 years 5 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
IJBRA
2006
111views more  IJBRA 2006»
13 years 8 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
FPL
2009
Springer
101views Hardware» more  FPL 2009»
14 years 21 days ago
An accelerator for K-TH nearest neighbor thinning based on the IMORC infrastructure
The creation and optimization of FPGA accelerators comprising several compute cores and memories are challenging tasks in high performance reconfigurable computing. In this paper...
Tobias Schumacher, Christian Plessl, Marco Platzne...
CCGRID
2005
IEEE
14 years 1 months ago
View-oriented update protocol with integrated diff for view-based consistency
This paper proposes a View-Oriented Update Protocol with Integrated Diff for efficient implementation of a View-based Consistency model which supports a novel View-Oriented Paral...
Zhiyi Huang, Martin K. Purvis, Paul Werstein