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IPPS
2006
IEEE
14 years 2 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
EUROPAR
2004
Springer
14 years 1 months ago
Load and Memory Balanced Mesh Partitioning for a Parallel Envelope Method
Abstract. We use a parallel direct solver based on the Schur complement method for solving large sparse linear systems arising from the finite element method. A domain decompositi...
Ondrej Medek, Pavel Tvrdík, Jaroslav Kruis
HPCC
2005
Springer
14 years 1 months ago
Transactional Cluster Computing
A lot of sophisticated techniques and platforms have been proposed to build distributed object systems. Remote method invocation and explicit message passing on top of traditional...
Stefan Frenz, Michael Schöttner, Ralph Gö...
PPOPP
2012
ACM
12 years 3 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao
VLSID
2002
IEEE
142views VLSI» more  VLSID 2002»
14 years 8 months ago
Address Code and Arithmetic Optimizations for Embedded Systems
An important class of problems used widely in both the embedded systems and scientific domains perform memory intensive computations on large data sets. These data sets get to be ...
J. Ramanujam, Satish Krishnamurthy, Jinpyo Hong, M...