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» Optimizing Multiple Spaced Seeds for Homology Search
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RECOMB
2004
Springer
14 years 7 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
ICALP
2005
Springer
14 years 1 months ago
Optimal Spaced Seeds for Faster Approximate String Matching
Filtering is a standard technique for fast approximate string matching in practice. In filtering, a quick first step is used to rule out almost all positions of a text as possib...
Martin Farach-Colton, Gad M. Landau, Süleyman...
CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
13 years 9 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
CVPR
2007
IEEE
14 years 9 months ago
Efficient Sampling of Disparity Space for Fast And Accurate Matching
A simple stereo matching algorithm is proposed that visits only a small fraction of disparity space in order to find a semi-dense disparity map. It works by growing from a small s...
Jan Cech, Radim Sára
ILP
2005
Springer
14 years 1 months ago
A Framework for Set-Oriented Computation in Inductive Logic Programming and Its Application in Generalizing Inverse Entailment
We propose a new approach to Inductive Logic Programming that systematically exploits caching and offers a number of advantages over current systems. It avoids redundant computati...
Héctor Corrada Bravo, David Page, Raghu Ram...