Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Iterative numerical algorithms with high memory bandwidth requirements but medium-size data sets (matrix size ∼ a few 100s) are highly appropriate for FPGA acceleration. This pap...
Abid Rafique, Nachiket Kapre, George A. Constantin...
Many scientific applications manipulate large amount of data and, therefore, are parallelized on high-performance computing systems to take advantage of their computational power a...
Software distributed shared memory (DSM) systems have successfully provided the illusion of shared memory on distributed memory machines. However, most software DSM systems use th...
Sandhya Dwarkadas, Robert Stets, Nikos Hardavellas...
This paper presents a middleware capable of out-of-order execution of kernels and data transfers for efficient stream processing in the compute unified device architecture (CUDA). ...