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BMCBI
2007
106views more  BMCBI 2007»
13 years 8 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
ARC
2012
Springer
317views Hardware» more  ARC 2012»
12 years 4 months ago
A High Throughput FPGA-Based Implementation of the Lanczos Method for the Symmetric Extremal Eigenvalue Problem
Iterative numerical algorithms with high memory bandwidth requirements but medium-size data sets (matrix size ∼ a few 100s) are highly appropriate for FPGA acceleration. This pap...
Abid Rafique, Nachiket Kapre, George A. Constantin...
HIPC
2000
Springer
14 years 5 days ago
Meta-data Management System for High-Performance Large-Scale Scientific Data Access
Many scientific applications manipulate large amount of data and, therefore, are parallelized on high-performance computing systems to take advantage of their computational power a...
Wei-keng Liao, Xiaohui Shen, Alok N. Choudhary
IPPS
1999
IEEE
14 years 26 days ago
Cashmere-VLM: Remote Memory Paging for Software Distributed Shared Memory
Software distributed shared memory (DSM) systems have successfully provided the illusion of shared memory on distributed memory machines. However, most software DSM systems use th...
Sandhya Dwarkadas, Robert Stets, Nikos Hardavellas...
IFE
2010
87views more  IFE 2010»
13 years 5 months ago
A middleware for efficient stream processing in CUDA
This paper presents a middleware capable of out-of-order execution of kernels and data transfers for efficient stream processing in the compute unified device architecture (CUDA). ...
Shinta Nakagawa, Fumihiko Ino, Kenichi Hagihara