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» Overestimation for Multiple Sequence Alignment
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RECOMB
2009
Springer
14 years 8 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu
HICSS
2003
IEEE
90views Biometrics» more  HICSS 2003»
14 years 29 days ago
A Prototype for Multiple Whole Genome Alignment
In this paper, we briefly describe a prototype of the software system we have developed for multiple whole genome alignment. To develop our algorithm, we have to solve several pr...
Jitender S. Deogun, Fangrui Ma, Jingyi Yang, Andre...
CIKM
2009
Springer
14 years 2 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim
PAMI
2002
85views more  PAMI 2002»
13 years 7 months ago
Spatio-Temporal Alignment of Sequences
This paper studies the problem of sequence-to-sequence alignment, namely, establishing correspondences in time and in space between two different video sequences of the same dynami...
Yaron Caspi, Michal Irani
BMEI
2008
IEEE
14 years 2 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang