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» P Systems with Proteins on Membranes
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BMCBI
2002
126views more  BMCBI 2002»
13 years 7 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
ML
1998
ACM
115views Machine Learning» more  ML 1998»
13 years 7 months ago
Pharmacophore Discovery Using the Inductive Logic Programming System PROGOL
This paper is a case study of a machine aided knowledge discovery process within the general area of drug design. More speci cally, the paper describes a sequence of experiments in...
Paul W. Finn, Stephen Muggleton, David Page, Ashwi...
ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
BIB
2008
101views more  BIB 2008»
13 years 7 months ago
Information quality in proteomics
Proteomics, the study of the protein complement of a biological system, is generating increasing quantities of data from rapidly developing technologies employed in a variety of d...
David Stead, Norman W. Paton, Paolo Missier, Suzan...
SSDBM
2003
IEEE
123views Database» more  SSDBM 2003»
14 years 19 days ago
MoBIoS: A Metric-Space DBMS to Support Biological Discovery
MoBIoS is a specialized database management system whose storage manager is based on metric-space indexing, and whose query language entails biological data types. When relational...
Daniel P. Miranker, Weijia Xu, Rui Mao