39 search results - page 7 / 8 » PARALLEL-TCOFFEE: A parallel multiple sequence aligner |
BMCBI
2006
13 years 7 months ago
2006
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
CCGRID
2003
IEEE
14 years 12 days ago
2003
IEEE
Fixed-parameter tractability (FPT) techniques have recently been successful in solving NP-complete problem instances of practical importance which were too large to be solved with...
IPPS
2010
IEEE
13 years 5 months ago
2010
IEEE
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
BMCBI
2011
12 years 10 months ago
2011
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
SASP
2009
IEEE
14 years 1 months ago
2009
IEEE
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...