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» PSI: indexing protein structures for fast similarity search
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SIGMOD
2006
ACM
125views Database» more  SIGMOD 2006»
14 years 7 months ago
A non-linear dimensionality-reduction technique for fast similarity search in large databases
To enable efficient similarity search in large databases, many indexing techniques use a linear transformation scheme to reduce dimensions and allow fast approximation. In this re...
Khanh Vu, Kien A. Hua, Hao Cheng, Sheau-Dong Lang
RECOMB
2009
Springer
14 years 8 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
ADC
2007
Springer
183views Database» more  ADC 2007»
13 years 11 months ago
Efficient Similarity Search by Summarization in Large Video Database
With the explosion of video data, video processing technologies have advanced quickly and been applied into many fields, such as advertisements, medical etc.. To fast search these...
Xiangmin Zhou, Xiaofang Zhou, Heng Tao Shen
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
13 years 11 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang