Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
: The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables...
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois,...
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Abstract. This paper deals with the theory and applications of spatially-variant mathematical morphology. We formalize the definition of spatially variant dilation/erosion and ope...
Abstract. Abstraction is essential in the formal specification of programs. A common way of writing abstract specifications is to specify implementations in terms of basic mathem...