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CC
2006
Springer
125views System Software» more  CC 2006»
14 years 26 days ago
Path-Based Reuse Distance Analysis
Abstract. Profiling can effectively analyze program behavior and provide critical information for feedback-directed or dynamic optimizations. Based on memory profiling, reuse dista...
Changpeng Fang, Steve Carr, Soner Önder, Zhen...
BMCBI
2010
126views more  BMCBI 2010»
13 years 9 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
SIAMSC
2010
116views more  SIAMSC 2010»
13 years 7 months ago
Recursively Accelerated Multilevel Aggregation for Markov Chains
A recursive acceleration method is proposed for multiplicative multilevel aggregation algorithms that calculate the stationary probability vector of large, sparse, and irreducible ...
Hans De Sterck, K. Miller, G. Sanders, M. Winlaw
CP
2003
Springer
14 years 2 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
BMCBI
2010
86views more  BMCBI 2010»
13 years 9 months ago
Fast motif recognition via application of statistical thresholds
Background: Improving the accuracy and efficiency of motif recognition is an important computational challenge that has application to detecting transcription factor binding sites...
Christina Boucher, James King