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BMCBI
2010
139views more  BMCBI 2010»
13 years 9 months ago
RNAstructure: software for RNA secondary structure prediction and analysis
Background: To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of...
Jessica S. Reuter, David H. Mathews
BMCBI
2007
124views more  BMCBI 2007»
13 years 9 months ago
Analysis on multi-domain cooperation for predicting protein-protein interactions
Background: Domains are the basic functional units of proteins. It is believed that protein-protein interactions are realized through domain interactions. Revealing multi-domain c...
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun ...
COMGEO
2008
ACM
13 years 9 months ago
Optimal location of transportation devices
We consider algorithms for finding the optimal location of a simple transportation device, that we call a moving walkway, consisting of a pair of points in the plane between which ...
Jean Cardinal, Sébastien Collette, Ferran H...
BMCBI
2006
129views more  BMCBI 2006»
13 years 9 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
JMLR
2008
150views more  JMLR 2008»
13 years 9 months ago
Discriminative Learning of Max-Sum Classifiers
The max-sum classifier predicts n-tuple of labels from n-tuple of observable variables by maximizing a sum of quality functions defined over neighbouring pairs of labels and obser...
Vojtech Franc, Bogdan Savchynskyy