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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 7 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
ALMOB
2006
89views more  ALMOB 2006»
13 years 7 months ago
On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the ...
Katharina Anna Lehmann, Michael Kaufmann, Stephan ...
BMCBI
2004
190views more  BMCBI 2004»
13 years 7 months ago
RAG: RNA-As-Graphs web resource
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie...
SODA
2010
ACM
201views Algorithms» more  SODA 2010»
14 years 5 months ago
Efficient Broadcast on Random Geometric Graphs
A Random Geometric Graph (RGG) in two dimensions is constructed by distributing n nodes independently and uniformly at random in [0, n ]2 and creating edges between every pair of...
Milan Bradonji, Robert Elsässer, Tobias Friedrich...
IJCAI
2007
13 years 9 months ago
Web Page Clustering Using Heuristic Search in the Web Graph
Effective representation of Web search results remains an open problem in the Information Retrieval community. For ambiguous queries, a traditional approach is to organize search ...
Ron Bekkerman, Shlomo Zilberstein, James Allan