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IPPS
2002
IEEE
14 years 1 months ago
Aligning Two Fragmented Sequences
Upon completion of the human and mouse genome sequences, world-wide sequencing capacity will turn to other complex organisms. Current strategies call for many of these genomes to ...
Vamsi Veeramachaneni, Piotr Berman, Webb Miller
FCT
2003
Springer
14 years 1 months ago
Graph Searching, Elimination Trees, and a Generalization of Bandwidth
The bandwidth minimization problem has a long history and a number of practical applications. In this paper we introduce a natural extension of bandwidth to partially ordered layo...
Fedor V. Fomin, Pinar Heggernes, Jan Arne Telle
PPOPP
2012
ACM
12 years 4 months ago
Better speedups using simpler parallel programming for graph connectivity and biconnectivity
Speedups demonstrated for finding the biconnected components of a graph: 9x to 33x on the Explicit Multi-Threading (XMT) many-core computing platform relative to the best serial ...
James A. Edwards, Uzi Vishkin
ICPP
1989
IEEE
14 years 15 days ago
Efficient Serial and Parallel Algorithms for Median Filtering
We develop a serial algorithm for separable median filtering that requires only two comparisons per element when the window size is three. In addition, fast parallel CREW PRAM al...
Sanjay Ranka, Sartaj Sahni
ICALP
2009
Springer
14 years 8 months ago
Approximation Algorithms via Structural Results for Apex-Minor-Free Graphs
We develop new structural results for apex-minor-free graphs and show their power by developing two new approximation algorithms. The first is an additive approximation for colorin...
Erik D. Demaine, MohammadTaghi Hajiaghayi, Ken-ich...