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» Parallel Assembler for Fuzzy Genome Sequence Assembly
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NAR
2010
174views more  NAR 2010»
13 years 2 months ago
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genom...
Hee Shin Kim, Terence Murphy, Jing Xia, Doina Cara...
BMCBI
2004
96views more  BMCBI 2004»
13 years 7 months ago
Gene finding in novel genomes
Background: Computational gene prediction continues to be an important problem, especially for genomes with little experimental data. Results: I introduce the SNAP gene finder whi...
Ian Korf
BMCBI
2010
93views more  BMCBI 2010»
13 years 7 months ago
JunctionViewer: customizable annotation software for repeat-rich genomic regions
Background: Repeat-rich regions such as centromeres receive less attention than their gene-rich euchromatic counterparts because the former are difficult to assemble and analyze. ...
Thomas K. Wolfgruber, Gernot G. Presting
NAR
2007
109views more  NAR 2007»
13 years 7 months ago
GeneTrees: a phylogenomics resource for prokaryotes
The GeneTrees phylogenomics system pursues comparative genomic analyses from the perspective of gene phylogenies for individual genes. The GeneTrees project has the goal of provid...
Yuying Tian, Allan W. Dickerman
BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...